BendNet Webserver Manual

Extract

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Step1: Choose Input

There are two type for choosing: Text and File

Text: Applicable to inputting fewer genomic locations.

File: Applicable to inputting more genomic locations.

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Step2: Parameter Setting

There are 6 parameters to help extract genome bendability.

reference_point: The reference_point for the plotting could be either the region start (TSS), the region end (TES) or the center of the region. (defalt: center)

upstream: Distance upstream of the reference-point selected. (defalt: 500)

downstream: Distance downstream of the reference-point selected. (defalt: 500)

bin_size: Length, in bases, of the non-overlapping bins for averaging the score over the regions length. (default: 10)

species: 10 model species genome bendability. (defalt: Homo sapiens GRCh38.p13)

downstream: results will be sent to the email address you provided. (defalt: Null)

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Step3: Submit&Result

Predict

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Step1: Choose Input

There are two type for choosing: Text and File

Text: Applicable to inputting one DNA sequence.

File: Applicable to inputting one and mutiply DNA sequence.

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Step2: Submit&Result

Motif

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Step1: Input TF name

eg: CTCF

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Step2: Submit&Result